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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:19.8TPM
GTEx:17.5RPKM
FANTOM5:25.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Medium
 

Antibody staining

Antibody HPA046974

  

Endothelial cells

 High  

Glandular cells

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

19.8
overview Male, age 54 Sample 1
TPM: 21.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 16.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 15.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 30.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 23.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 22.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 19.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 19.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 26
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 16.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.4
Samples: 149

Max RPKM: 28.6
Min RPKM: 12.6
Std RPKM: 2.7
Median RPKM: 20.4
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 28.6
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 27.7
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 26.6
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 26.5
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 25.4
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 24.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 24.4
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 24.3
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 24.2
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 24.0
Show all
Colon - Transverse
RPKM: 15.4
Samples: 196

Max RPKM: 25.3
Min RPKM: 4.5
Std RPKM: 3.7
Median RPKM: 15.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 25.3
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 23.3
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 23.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 23.2
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 23.1
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 22.3
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 22.1
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 22.0
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 21.9
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 21.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

25.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 25.6
FF:10014-101C5 62,83,84 years, mixed 25.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.