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SLC39A1

COLON - Expression summary

RNA expression
HPA:39.3TPM
GTEx:29.3RPKM
FANTOM5:38.6Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

39.3
overview Male, age 54 Sample 1
TPM: 46.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 37
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 38.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 38.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 45.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 47.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 37.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 41
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 34
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 40
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 43.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 35.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

29.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 29.8
Samples: 149

Max RPKM: 61.6
Min RPKM: 18.7
Std RPKM: 7.7
Median RPKM: 28.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 61.6
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 59.4
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 55.3
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 54.5
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 48.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 48.4
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 47.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 46.4
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 44.5
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 44.4
Show all
Colon - Transverse
RPKM: 28.9
Samples: 196

Max RPKM: 58.8
Min RPKM: 13.6
Std RPKM: 6.8
Median RPKM: 27.4
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 58.8
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 55.9
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 52.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 52.8
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 46.4
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 46.4
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 44.9
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 44.8
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 44.8
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 43.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

38.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 38.6
FF:10014-101C5 62,83,84 years, mixed 38.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.