Fields »
ABOUT
HELP
BLOG
TTC13

COLON - Expression summary

RNA expression
HPA:10.7TPM
GTEx:6.9RPKM
FANTOM5:19.3Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA018022

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

10.7
overview Male, age 54 Sample 1
TPM: 14.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 14.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.8
Samples: 149

Max RPKM: 11.0
Min RPKM: 2.3
Std RPKM: 1.2
Median RPKM: 4.6
GTEX-V955-1726-SM-4JBHF 60-69 years, male 11.0
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 10.0
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 8.5
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 7.5
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 7.3
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 7.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 7.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 6.7
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 6.7
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 6.7
Show all
Colon - Transverse
RPKM: 8.5
Samples: 196

Max RPKM: 17.0
Min RPKM: 2.9
Std RPKM: 3.1
Median RPKM: 8.8
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 17.0
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 16.5
GTEX-11LCK-2026-SM-5A5MA 30-39 years, male 15.3
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 15.3
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 15.0
GTEX-S4P3-1226-SM-4AD4Y 50-59 years, female 14.4
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 14.1
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 14.0
GTEX-VJYA-2026-SM-4KL1K 60-69 years, male 13.9
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 13.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

19.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 19.3
FF:10014-101C5 62,83,84 years, mixed 19.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.