Tissue expression of SOX13 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	SOX13
Gene description	SRY (sex determining region Y)-box 13
Protein class	Plasma proteins Predicted intracellular proteins Transcription factors
Predicted localization	Intracellular
Number of transcripts	4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Mixed
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Mixed
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	SOX13 (HGNC Symbol)
Synonyms	ICA12, MGC117216, Sox-13
Description	SRY (sex determining region Y)-box 13 (HGNC Symbol)
Entrez gene summary	This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. It has also been determined to be a type-1 diabetes autoantigen, also known as islet cell antibody 12. [provided by RefSeq, Jul 2008]
Chromosome	1
Cytoband	q32.1
Chromosome location (bp)	204073115 - 204127743
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000143842 (version 83.38)
Entrez gene	9580
UniProt	Q9UN79 (UniProt - Evidence at protein level)
neXtProt	NX_Q9UN79
Antibodypedia	SOX13 antibodies

PROTEIN BROWSER

SOX13-002	SOX13-007	SOX13-008	SOX13-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SOX13-002 ENSP00000356172 ENST00000367204	Q9UN79 [Direct mapping] Transcription factor SOX-13 Show all	Predicted intracellular proteins Plasma proteins Transcription factors Other all-alpha-helical DNA-binding domains Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000977 [RNA polymerase II regulatory region sequence-specific DNA binding] GO:0003700 [transcription factor activity, sequence-specific DNA binding] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0006351 [transcription, DNA-templated] GO:0006355 [regulation of transcription, DNA-templated] GO:0009653 [anatomical structure morphogenesis] GO:0043565 [sequence-specific DNA binding] GO:0045586 [regulation of gamma-delta T cell differentiation] Show all	622 aa 69.2 kDa	No	0
SOX13-007 ENSP00000433595 ENST00000525442	E9PKD6 [Direct mapping] Transcription factor SOX-13 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		57 aa 5.9 kDa	No	0
SOX13-008 ENSP00000436297 ENST00000528591	E9PPW0 [Direct mapping] Transcription factor SOX-13 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		180 aa 19.4 kDa	No	0
SOX13-201 ENSP00000478239 ENST00000618875	Q9UN79 [Direct mapping] Transcription factor SOX-13 Show all	Predicted intracellular proteins Plasma proteins Transcription factors Other all-alpha-helical DNA-binding domains Protein evidence (Ezkurdia et al 2014) Show all	GO:0003700 [transcription factor activity, sequence-specific DNA binding] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0006351 [transcription, DNA-templated] GO:0006355 [regulation of transcription, DNA-templated] GO:0009653 [anatomical structure morphogenesis] GO:0043565 [sequence-specific DNA binding] Show all	622 aa 69.2 kDa	No	0