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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:72.6TPM
GTEx:31.6RPKM
FANTOM5:57.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA017324

  

Antibody CAB018649

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

72.6
overview Male, age 54 Sample 1
TPM: 34.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 37.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 132.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 78.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 100.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 113.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 22.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 68.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 97.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 45.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 112.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 84.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

31.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 39.0
Samples: 149

Max RPKM: 349.1
Min RPKM: 0.2
Std RPKM: 35.9
Median RPKM: 33.7
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 349.1
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 125.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 109.1
GTEX-ZZ64-0826-SM-5E449 20-29 years, male 103.2
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 98.8
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 98.0
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 93.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 89.7
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 89.5
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 88.4
Show all
Colon - Transverse
RPKM: 26.0
Samples: 196

Max RPKM: 230.9
Min RPKM: 0.6
Std RPKM: 33.2
Median RPKM: 13.9
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 230.9
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 212.5
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 204.8
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 158.7
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 97.7
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 95.1
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 94.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 94.4
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 91.7
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 83.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

57.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 57.1
FF:10014-101C5 62,83,84 years, mixed 57.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.