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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:8.6TPM
GTEx:3.3RPKM
FANTOM5:74.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA005647

  

Antibody CAB015461

  

Antibody CAB068183

  

Antibody CAB068184

  

Endothelial cells

 Medium   Low   Medium   Medium  

Glandular cells

 High   Medium   High   High  

Peripheral nerve/ganglion

 Not detected  
          
       
       

COLON - HPA RNA-seq

Average TPM

8.6
overview Male, age 54 Sample 1
TPM: 8.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 9.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 8.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.1
Samples: 149

Max RPKM: 6.2
Min RPKM: 1.6
Std RPKM: 0.7
Median RPKM: 2.9
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 6.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 5.0
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 5.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 5.0
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 4.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 4.9
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 4.9
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 4.7
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 4.6
GTEX-145LS-2926-SM-5O99G 60-69 years, female 4.4
Show all
Colon - Transverse
RPKM: 3.4
Samples: 196

Max RPKM: 7.0
Min RPKM: 1.7
Std RPKM: 0.8
Median RPKM: 3.3
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 7.0
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 6.7
GTEX-1128S-1626-SM-5H12O 60-69 years, female 6.3
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 6.3
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 6.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 5.9
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 5.2
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 5.0
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 4.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 4.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

74.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 74.6
FF:10014-101C5 62,83,84 years, mixed 74.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.