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SLC39A4

COLON - Expression summary

RNA expression
HPA:7.0TPM
GTEx:21.1RPKM
FANTOM5:228.6Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

7.0
overview Male, age 54 Sample 1
TPM: 5.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 8.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.5
Samples: 149

Max RPKM: 62.9
Min RPKM: 1.3
Std RPKM: 5.0
Median RPKM: 3.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 62.9
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 11.1
GTEX-V955-1726-SM-4JBHF 60-69 years, male 10.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 9.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 7.7
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 5.7
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 5.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 5.3
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 4.8
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 4.5
Show all
Colon - Transverse
RPKM: 34.6
Samples: 196

Max RPKM: 348.8
Min RPKM: 0.9
Std RPKM: 44.1
Median RPKM: 22.7
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 348.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 188.1
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 186.7
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 183.3
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 182.5
GTEX-11DXX-1826-SM-5H126 60-69 years, female 163.3
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 143.6
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 143.3
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 137.4
GTEX-13D11-0826-SM-5KLZJ 50-59 years, female 134.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

228.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 228.6
FF:10014-101C5 62,83,84 years, mixed 228.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.