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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:314.5TPM
GTEx:125.2RPKM
FANTOM5:576.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA054026

  

Antibody CAB010823

  

Antibody CAB016728

  

Antibody CAB036009

  

Endothelial cells

 Medium   Low   High   Medium  

Glandular cells

 High   Medium   Low   Low  

Peripheral nerve/ganglion

 Low   High   Not detected  
          
       
       
       

COLON - HPA RNA-seq

Average TPM

314.5
overview Male, age 54 Sample 1
TPM: 328.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 283.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 152.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 456.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 407.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 426.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 153.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 198.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 285.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 142.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 494
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 484.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 275.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

125.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 157.1
Samples: 149

Max RPKM: 324.0
Min RPKM: 66.0
Std RPKM: 43.6
Median RPKM: 149.7
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 324.0
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 296.4
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 295.3
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 287.5
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 285.7
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 254.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 247.4
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 229.1
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 228.7
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 228.2
Show all
Colon - Transverse
RPKM: 101.0
Samples: 196

Max RPKM: 425.1
Min RPKM: 28.9
Std RPKM: 59.9
Median RPKM: 83.0
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 425.1
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 313.1
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 285.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 255.5
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 253.2
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 242.1
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 239.4
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 210.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 210.2
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 204.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

576.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 576.2
FF:10014-101C5 62,83,84 years, mixed 576.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.