We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
FAM171A1
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:57.2RPKM
FANTOM5:70.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA051345

 

Glial cells

Low  

Neuronal cells

Medium  
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

57.2

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 57.2
Samples: 117

Max RPKM: 97.5
Min RPKM: 15.0
Std RPKM: 19.5
Median RPKM: 58.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 97.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 96.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 95.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 93.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 92.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 90.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 86.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 83.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 82.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 81.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 81.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 81.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 80.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 80.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 79.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 78.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 78.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 78.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 78.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 78.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 77.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 77.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 76.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 75.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 75.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 75.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 74.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 73.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 72.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 71.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 71.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 71.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 71.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 71.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 71.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 70.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 70.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 69.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 69.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 68.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 68.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 68.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 68.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 67.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 66.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 66.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 64.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 63.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 63.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 62.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 62.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 61.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 61.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 60.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 59.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 59.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 59.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 58.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 58.6
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 56.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 55.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 54.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 54.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 53.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 53.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 53.3
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 51.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 51.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 51.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 50.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 50.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 49.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 49.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 49.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 48.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 48.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 47.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 47.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 47.4
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 47.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 47.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 46.9
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 46.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 46.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 46.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 45.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 44.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 43.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 40.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 40.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 39.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 38.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 37.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 37.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 37.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 37.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 37.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 36.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 36.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 35.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 34.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 33.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 32.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 32.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 32.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 32.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 32.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 29.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 25.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 24.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 24.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 23.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 22.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 22.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 22.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 17.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 15.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

70.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 65.9
FF:10164-103B2 76 years, female 65.9

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.