Fields »
ABOUT
HELP
BLOG
CACNA1C

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:3.7TPM
GTEx:12.1RPKM
FANTOM5:46.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Not detected
 

Antibody staining

Antibody HPA039796

  

Endothelial cells

 High  

Glandular cells

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

3.7
overview Male, age 54 Sample 1
TPM: 3.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 5.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.4
Samples: 149

Max RPKM: 30.1
Min RPKM: 8.4
Std RPKM: 4.1
Median RPKM: 18.9
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 30.1
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 29.8
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 27.7
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 27.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 26.7
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 25.8
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 25.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 25.1
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 24.7
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 24.5
Show all
Colon - Transverse
RPKM: 7.3
Samples: 196

Max RPKM: 29.9
Min RPKM: 0.1
Std RPKM: 7.5
Median RPKM: 4.6
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 29.9
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 28.5
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 26.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 25.2
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 24.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 23.8
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 23.1
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 22.9
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 22.0
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 21.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

46.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 46.6
FF:10014-101C5 62,83,84 years, mixed 46.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.