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COLON - Expression summary

RNA expression
HPA:4.3TPM
GTEx:17.0RPKM
FANTOM5:10.1Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

4.3
overview Male, age 54 Sample 1
TPM: 6.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 6.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 21.8
Samples: 149

Max RPKM: 41.1
Min RPKM: 6.3
Std RPKM: 6.5
Median RPKM: 21.5
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 41.1
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 40.0
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 39.8
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 39.8
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 37.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 36.5
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 35.2
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 33.8
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 33.6
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 33.4
Show all
Colon - Transverse
RPKM: 13.4
Samples: 196

Max RPKM: 42.0
Min RPKM: 2.5
Std RPKM: 8.6
Median RPKM: 10.6
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 42.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 41.6
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 37.4
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 36.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 35.6
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 35.0
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 34.6
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 34.5
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 34.5
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 33.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

10.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 10.1
FF:10014-101C5 62,83,84 years, mixed 10.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.