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COLON - Expression summary

Protein expression
N/A

RNA expression
HPA:17.0TPM
GTEx:5.0RPKM
FANTOM5:25.3Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

17.0
overview Male, age 54 Sample 1
TPM: 17.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 19.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 16.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 18.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 12.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.4
Samples: 149

Max RPKM: 8.0
Min RPKM: 3.4
Std RPKM: 0.9
Median RPKM: 5.3
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 8.0
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 7.9
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 7.9
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 7.8
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 7.5
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 7.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 7.0
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 7.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 6.9
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 6.9
Show all
Colon - Transverse
RPKM: 4.7
Samples: 196

Max RPKM: 6.8
Min RPKM: 2.1
Std RPKM: 0.8
Median RPKM: 4.6
GTEX-Y114-1526-SM-4TT79 50-59 years, female 6.8
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 6.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 6.7
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 6.6
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 6.5
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 6.5
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 6.4
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 6.4
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 6.3
GTEX-VJYA-2026-SM-4KL1K 60-69 years, male 6.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

25.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 25.3
FF:10014-101C5 62,83,84 years, mixed 25.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.