Cell atlas - SCOC - The Human Protein Atlas

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SCOC

TISSUE

CELL

PATHOLOGY

CELL ATLAS RNA EXPRESSION HUMAN CELLS

GENE/PROTEIN

Antibody validation

Dictionary
	Golgi apparatus
	Nucleoplasm

Human cell
	Golgi Apparatus
	Nucleoplasm

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GENERAL INFORMATION
Gene name	SCOC
Gene description	Short coiled-coil protein
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	11
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HUMAN PROTEIN ATLAS INFORMATION
Summary	Localized to the Golgi apparatus & nucleoplasm.
RNA cell category	Expressed in all
Protein evidence	Evidence at protein level
Main location	Localized to the Nucleoplasm (approved), Golgi apparatus (supported)

DATA RELIABILITY
Reliability score	Approved based on 1 antibody. HPA061198
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ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Expressed in all Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

HUMAN CELLS

Summary

Localized to the Golgi apparatus & nucleoplasm.

Main location

Nucleoplasm (approved), Golgi apparatus (supported)


	Toggle channels	Low High G1 S G2 M N/A

Thumbnail	Antibody	Cell line	Location	Single-cell variation	Cell cycle dependent variation
	HPA061198	Hep G2	Nucleoplasm
	HPA061198	SiHa	Nucleoplasm
	HPA061198	SiHa	Golgi apparatus
	HPA061198	U-2 OS	No staining

GENE INFORMATION
Gene name	SCOC (HGNC Symbol)
Synonyms	HRIHFB2072, SCOCO
Description	Short coiled-coil protein (HGNC Symbol)
Entrez gene summary	This gene encodes a short coiled-coiled domain-containing protein that localizes to the Golgi apparatus. The encoded protein interacts with ADP-ribosylation factor-like proteins. Pseudogenes of this gene are found on chromosomes 1 and 14. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2009]
Chromosome	4
Cytoband	q31.1
Chromosome location (bp)	140257286 - 140385726
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000153130 (version 83.38)
Entrez gene	60592
UniProt	Q9UIL1 (UniProt - Evidence at protein level)
neXtProt	NX_Q9UIL1
Antibodypedia	SCOC antibodies

PROTEIN BROWSER

SCOC-001	SCOC-002	SCOC-003	SCOC-004	SCOC-005	SCOC-006	SCOC-007	SCOC-009	SCOC-010	SCOC-201	SCOC-202

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SCOC-001 ENSP00000477352 ENST00000608372	Q9UIL1 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0005515 [protein binding] GO:0005768 [endosome] GO:0005802 [trans-Golgi network] GO:0005829 [cytosol] GO:0016239 [positive regulation of macroautophagy] GO:0061635 [regulation of protein complex stability] Show all	159 aa 18 kDa	No	0
SCOC-002 ENSP00000345262 ENST00000338517	Q9UIL1 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0005515 [protein binding] GO:0005768 [endosome] GO:0005802 [trans-Golgi network] GO:0005829 [cytosol] GO:0016239 [positive regulation of macroautophagy] GO:0061635 [regulation of protein complex stability] Show all	122 aa 13.9 kDa	No	0
SCOC-003 ENSP00000377755 ENST00000394205	Q9UIL1 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0005515 [protein binding] GO:0005768 [endosome] GO:0005802 [trans-Golgi network] GO:0005829 [cytosol] GO:0016239 [positive regulation of macroautophagy] GO:0061635 [regulation of protein complex stability] Show all	122 aa 13.9 kDa	No	0
SCOC-004 ENSP00000426649 ENST00000506597	Q9UIL1 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0005515 [protein binding] GO:0005768 [endosome] GO:0005802 [trans-Golgi network] GO:0005829 [cytosol] GO:0016239 [positive regulation of macroautophagy] GO:0061635 [regulation of protein complex stability] Show all	131 aa 14.8 kDa	No	0
SCOC-005 ENSP00000424688 ENST00000510586	A0A0C4DGB0 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		82 aa 9.4 kDa	No	0
SCOC-006 ENSP00000424605 ENST00000512749	A0A0C4DGB0 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		82 aa 9.4 kDa	No	0
SCOC-007 ENSP00000421355 ENST00000502535	A0A0C4DGB0 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		82 aa 9.4 kDa	No	0
SCOC-009 ENSP00000426810 ENST00000506322	A0A0C4DGB0 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		82 aa 9.4 kDa	No	0
SCOC-010 ENSP00000377751 ENST00000394201	A0A0C4DGB0 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		82 aa 9.4 kDa	No	0
SCOC-201 ENSP00000377753 ENST00000394203	Q9UIL1 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0005515 [protein binding] GO:0005768 [endosome] GO:0005802 [trans-Golgi network] GO:0005829 [cytosol] GO:0016239 [positive regulation of macroautophagy] GO:0061635 [regulation of protein complex stability] Show all	122 aa 13.9 kDa	No	0
SCOC-202 ENSP00000477812 ENST00000614192	Q9UIL1 [Direct mapping] Short coiled-coil protein Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000139 [Golgi membrane] GO:0005515 [protein binding] GO:0005768 [endosome] GO:0005802 [trans-Golgi network] GO:0005829 [cytosol] GO:0016239 [positive regulation of macroautophagy] GO:0061635 [regulation of protein complex stability] Show all	159 aa 18 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.