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AHCTF1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:9.4TPM
GTEx:6.3RPKM
FANTOM5:30.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA031658

  

Endothelial cells

 Low  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

9.4
overview Male, age 54 Sample 1
TPM: 14.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 13.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 5.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.2
Samples: 149

Max RPKM: 13.8
Min RPKM: 3.2
Std RPKM: 1.6
Median RPKM: 6.8
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 13.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 13.2
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 12.9
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 12.4
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 11.2
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 10.6
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 10.6
GTEX-145LS-2926-SM-5O99G 60-69 years, female 10.0
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 9.9
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 9.8
Show all
Colon - Transverse
RPKM: 5.6
Samples: 196

Max RPKM: 11.4
Min RPKM: 2.6
Std RPKM: 1.7
Median RPKM: 5.1
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 11.4
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 10.8
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 10.5
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 10.5
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 10.1
GTEX-S341-1426-SM-4AD6U 40-49 years, female 9.4
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 9.2
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 9.2
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 9.1
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 8.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

30.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 30.4
FF:10014-101C5 62,83,84 years, mixed 30.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.