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Method

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CACNA2D1
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    TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

CACNA2D1

Gene description

Calcium channel, voltage-dependent, alpha 2/delta subunit 1

Protein class

FDA approved drug targets
Plasma proteins
Predicted intracellular proteins
Predicted membrane proteins
Predicted secreted proteins
Transporters

Predicted localization

Intracellular,Membrane,Secreted

Number of transcripts

4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Mixed
GTEx:Mixed
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in the CNS and skeletal myocytes.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. External characterization data supports antibody staining.

Reliability score

Supported based on 2 antibodies.
HPA008213 , HPA008621
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Skeletal muscle

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

CACNA2D1 (HGNC Symbol)

Synonyms

CACNA2, CACNL2A, LINC01112, lncRNA-N3, MHS3

Description

Calcium channel, voltage-dependent, alpha 2/delta subunit 1 (HGNC Symbol)

Entrez gene summary

The preproprotein encoded by this gene is cleaved into multiple chains that comprise the alpha-2 and delta subunits of the voltage-dependent calcium channel complex. Calcium channels mediate the influx of calcium ions into the cell upon membrane polarization. Mutations in this gene can cause cardiac deficiencies, including Brugada syndrome and short QT syndrome. Alternate splicing results in multiple transcript variants, some of which may lack the delta subunit portion. [provided by RefSeq, Nov 2014]

Chromosome

7

Cytoband

q21.11

Chromosome location (bp)

81946444 - 82443798

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000153956 (version 83.38)

Entrez gene

781

UniProt

P54289 (UniProt - Evidence at protein level)

neXtProt

NX_P54289

Antibodypedia

CACNA2D1 antibodies

PROTEIN BROWSER

CACNA2D1-001
CACNA2D1-002
CACNA2D1-005
CACNA2D1-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

CACNA2D1-001
ENSP00000349320
ENST00000356860
P54289 [Direct mapping]
Voltage-dependent calcium channel subunit alpha-2/delta-1 Voltage-dependent calcium channel subunit alpha-2-1 Voltage-dependent calcium channel subunit delta-1
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
FDA approved drug targets
   Small molecule drugs
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005245 [voltage-gated calcium channel activity]
GO:0005246 [calcium channel regulator activity]
GO:0005515 [protein binding]
GO:0005891 [voltage-gated calcium channel complex]
GO:0006816 [calcium ion transport]
GO:0016529 [sarcoplasmic reticulum]
GO:0030315 [T-tubule]
GO:0034765 [regulation of ion transmembrane transport]
GO:0046872 [metal ion binding]
GO:0051924 [regulation of calcium ion transport]
GO:0070062 [extracellular exosome]
GO:0070588 [calcium ion transmembrane transport]
Show all
1091 aa
123.2 kDa
Yes 1
CACNA2D1-002
ENSP00000405395
ENST00000423588
E7ERK3 [Direct mapping]
Voltage-dependent calcium channel subunit alpha-2/delta-1
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005246 [calcium channel regulator activity]
GO:0070588 [calcium ion transmembrane transport]
Show all
309 aa
34.6 kDa
Yes 0
CACNA2D1-005
ENSP00000409374
ENST00000443883
H0Y715 [Direct mapping]
Voltage-dependent calcium channel subunit alpha-2/delta-1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005246 [calcium channel regulator activity]
GO:0070588 [calcium ion transmembrane transport]
Show all
280 aa
32.4 kDa
No 0
CACNA2D1-201
ENSP00000348589
ENST00000356253
P54289 [Direct mapping]
Voltage-dependent calcium channel subunit alpha-2/delta-1 Voltage-dependent calcium channel subunit alpha-2-1 Voltage-dependent calcium channel subunit delta-1
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
FDA approved drug targets
   Small molecule drugs
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005245 [voltage-gated calcium channel activity]
GO:0005246 [calcium channel regulator activity]
GO:0005891 [voltage-gated calcium channel complex]
GO:0006816 [calcium ion transport]
GO:0034765 [regulation of ion transmembrane transport]
GO:0046872 [metal ion binding]
GO:0051924 [regulation of calcium ion transport]
GO:0070062 [extracellular exosome]
GO:0070588 [calcium ion transmembrane transport]
Show all
1103 aa
124.6 kDa
Yes 1

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