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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.5TPM
GTEx:1.5RPKM
FANTOM5:7.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA028402

  

Antibody HPA043443

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Low   Low  

Peripheral nerve/ganglion

 Medium   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

2.5
overview Male, age 54 Sample 1
TPM: 2.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.4
Samples: 149

Max RPKM: 2.6
Min RPKM: 0.5
Std RPKM: 0.3
Median RPKM: 1.3
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 2.6
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 2.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 2.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 2.4
GTEX-12696-1926-SM-5EGJT 60-69 years, male 2.2
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 2.1
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 2.1
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 2.1
GTEX-13111-1926-SM-5GCOL 50-59 years, male 2.0
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 2.0
Show all
Colon - Transverse
RPKM: 1.6
Samples: 196

Max RPKM: 3.5
Min RPKM: 0.6
Std RPKM: 0.4
Median RPKM: 1.5
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 3.5
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 3.1
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 3.0
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 3.0
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 2.9
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 2.6
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 2.5
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 2.5
GTEX-VJYA-2026-SM-4KL1K 60-69 years, male 2.5
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 2.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

7.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 7.8
FF:10014-101C5 62,83,84 years, mixed 7.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.