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LSM11

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.2TPM
GTEx:3.7RPKM
FANTOM5:5.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
 

Antibody staining

Antibody HPA039587

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

2.2
overview Male, age 54 Sample 1
TPM: 2.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.0
Samples: 149

Max RPKM: 12.6
Min RPKM: 1.8
Std RPKM: 2.1
Median RPKM: 4.5
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 12.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 11.7
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 10.7
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 10.3
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 10.0
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 9.9
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 9.7
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 9.6
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 9.4
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 8.9
Show all
Colon - Transverse
RPKM: 2.7
Samples: 196

Max RPKM: 8.0
Min RPKM: 0.7
Std RPKM: 1.3
Median RPKM: 2.3
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 8.0
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 7.2
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 7.2
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 6.7
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 6.7
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 6.0
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 6.0
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 5.9
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 5.6
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 5.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

5.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 5.6
FF:10014-101C5 62,83,84 years, mixed 5.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.