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SH3RF2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:14.5TPM
GTEx:4.8RPKM
FANTOM5:37.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA058119

  

Endothelial cells

 Not detected  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

14.5
overview Male, age 54 Sample 1
TPM: 19.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 20.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 18.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.4
Samples: 149

Max RPKM: 4.9
Min RPKM: 0.0
Std RPKM: 0.6
Median RPKM: 0.2
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 4.9
GTEX-V955-1726-SM-4JBHF 60-69 years, male 4.4
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 4.0
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 2.7
GTEX-XBED-1726-SM-47JYO 60-69 years, male 2.5
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 1.4
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 1.4
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 1.3
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 1.3
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 1.2
Show all
Colon - Transverse
RPKM: 8.1
Samples: 196

Max RPKM: 20.3
Min RPKM: 0.0
Std RPKM: 5.7
Median RPKM: 9.4
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 20.3
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 19.2
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 17.7
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 17.7
GTEX-1211K-1726-SM-5FQUJ 60-69 years, female 17.0
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 17.0
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 16.4
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 16.1
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 16.1
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 16.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

37.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 37.7
FF:10014-101C5 62,83,84 years, mixed 37.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.