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SSBP3

COLON - Expression summary

RNA expression
HPA:26.8TPM
GTEx:10.3RPKM
FANTOM5:42.3Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

26.8
overview Male, age 54 Sample 1
TPM: 36.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 33.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 35.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 26
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 23.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 22
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 31
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 35.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.6
Samples: 149

Max RPKM: 17.7
Min RPKM: 4.4
Std RPKM: 2.3
Median RPKM: 10.4
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 17.7
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 17.2
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 16.4
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 15.5
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 15.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 15.0
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 14.7
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 14.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 14.3
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 14.2
Show all
Colon - Transverse
RPKM: 10.2
Samples: 196

Max RPKM: 17.8
Min RPKM: 6.2
Std RPKM: 2.0
Median RPKM: 9.9
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 17.8
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 16.2
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 15.4
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 15.3
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 15.2
GTEX-S341-1426-SM-4AD6U 40-49 years, female 14.8
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 14.8
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 14.6
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 14.4
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 14.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

42.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 42.3
FF:10014-101C5 62,83,84 years, mixed 42.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.