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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

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Score

Score

Score

Antibodies

Column

 
 
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PAFAH2
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

PAFAH2

Gene description

Platelet-activating factor acetylhydrolase 2, 40kDa

Protein class

Enzymes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General cytoplasmic expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA018157
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
N/A
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

PAFAH2 (HGNC Symbol)

Synonyms

HSD-PLA2

Description

Platelet-activating factor acetylhydrolase 2, 40kDa (HGNC Symbol)

Entrez gene summary

This gene encodes platelet-activating factor acetylhydrolase isoform 2, a single-subunit intracellular enzyme that catalyzes the removal of the acetyl group at the SN-2 position of platelet-activating factor (identified as 1-O-alkyl-2-acetyl-sn-glyceryl-3-phosphorylcholine). However, this lipase exhibits a broader substrate specificity than simply platelet activating factor. Two other isoforms of intracellular platelet-activating factor acetylhydrolase exist, and both are multi-subunit enzymes. Additionally, there is a single-subunit serum isoform of this enzyme. [provided by RefSeq, Jul 2008]

Chromosome

1

Cytoband

p36.11

Chromosome location (bp)

25959767 - 25998157

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000158006 (version 83.38)

Entrez gene

5051

UniProt

Q99487 (UniProt - Evidence at protein level)

neXtProt

NX_Q99487

Antibodypedia

PAFAH2 antibodies

PROTEIN BROWSER

PAFAH2-001
PAFAH2-003
PAFAH2-004
PAFAH2-005

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

PAFAH2-001
ENSP00000363400
ENST00000374282
Q99487 [Direct mapping]
Platelet-activating factor acetylhydrolase 2, cytoplasmic
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003847 [1-alkyl-2-acetylglycerophosphocholine esterase activity]
GO:0005543 [phospholipid binding]
GO:0005737 [cytoplasm]
GO:0006629 [lipid metabolic process]
GO:0016042 [lipid catabolic process]
GO:0043066 [negative regulation of apoptotic process]
Show all
392 aa
44 kDa
No 0
PAFAH2-003
ENSP00000411011
ENST00000441420
Q5SY01 [Direct mapping]
Platelet-activating factor acetylhydrolase 2, cytoplasmic
Show all
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003847 [1-alkyl-2-acetylglycerophosphocholine esterase activity]
GO:0016042 [lipid catabolic process]
Show all
165 aa
18.5 kDa
No 0
PAFAH2-004
ENSP00000363402
ENST00000374284
Q99487 [Direct mapping]
Platelet-activating factor acetylhydrolase 2, cytoplasmic
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003847 [1-alkyl-2-acetylglycerophosphocholine esterase activity]
GO:0005543 [phospholipid binding]
GO:0005737 [cytoplasm]
GO:0006629 [lipid metabolic process]
GO:0016042 [lipid catabolic process]
Show all
392 aa
44 kDa
No 0
PAFAH2-005
ENSP00000408313
ENST00000439092
Q5SY00 [Direct mapping]
Platelet-activating factor acetylhydrolase 2, cytoplasmic
Show all
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003847 [1-alkyl-2-acetylglycerophosphocholine esterase activity]
GO:0016042 [lipid catabolic process]
Show all
186 aa
21.2 kDa
No 0

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