Expression of PKD1L1 in cancer - Summary - The Human Protein Atlas

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PKD1L1

TISSUE

CELL

PATHOLOGY

PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary


Level of antibody staining/expression
	High Medium Low Not detected

GENERAL INFORMATION
Gene name	PKD1L1
Gene description	Polycystic kidney disease 1 like 1
Protein class	Plasma proteins Predicted membrane proteins Transporters
Predicted localization	Membrane
Number of transcripts	2
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):	Tissue enhanced (testis cancer)
HPA (cell line):	Group enriched (T-47d, U-266/70, U-266/84)
HPA (normal tissue):	Tissue enhanced (testis)

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Estimation of protein expression could not be performed. View primary data.

ANTIBODY IHC RELIABILITY
Data reliability description	RNA-based expert annotation gave inconclusive results. Pending external verification.
Reliability score	Uncertain based on 2 antibodies. HPA020422 , HPA022424
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PROGNOSTIC SUMMARY
Gene product is not prognostic.
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RNA EXPRESSION OVERVIEW
TCGA dataset RNA cancer category: Tissue enhanced (testis cancer)

PROTEIN EXPRESSION

Colorectal cancer

Prostate cancer

STAINING SUMMARY

HPA020422	HPA022424

GENE INFORMATION
Gene name	PKD1L1 (HGNC Symbol)
Synonyms	PRO19563
Description	Polycystic kidney disease 1 like 1 (HGNC Symbol)
Entrez gene summary	This gene encodes a member of the polycystin protein family containing 11 transmembrane domains, a receptor for egg jelly (REJ) domain, and a polycystin-1, lipoxygenase, alpha-toxin (PLAT) domain. The encoded protein may play a role in the male reproductive system. Alternative splice variants have been described but their biological nature has not been determined. [provided by RefSeq, Jul 2008]
Chromosome	7
Cytoband	p12.3
Chromosome location (bp)	47774652 - 47948491
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000158683 (version 83.38)
Entrez gene	168507
UniProt	Q8TDX9 (UniProt - Evidence at protein level)
neXtProt	NX_Q8TDX9
Antibodypedia	PKD1L1 antibodies

PROTEIN BROWSER

PKD1L1-001	PKD1L1-002

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
PKD1L1-001 ENSP00000289672 ENST00000289672	Q8TDX9 [Direct mapping] Polycystic kidney disease protein 1-like 1 Show all	Transporters Transporter channels and pores Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Plasma proteins Protein evidence (Kim et al 2014) Show all	GO:0003127 [detection of nodal flow] GO:0005262 [calcium channel activity] GO:0005515 [protein binding] GO:0005929 [cilium] GO:0007368 [determination of left/right symmetry] GO:0007507 [heart development] GO:0016020 [membrane] GO:0016337 [single organismal cell-cell adhesion] GO:0031513 [nonmotile primary cilium] GO:0034704 [calcium channel complex] GO:0050982 [detection of mechanical stimulus] GO:0060170 [ciliary membrane] GO:0060972 [left/right pattern formation] GO:0070588 [calcium ion transmembrane transport] GO:0070986 [left/right axis specification] Show all	2849 aa 315.4 kDa	No	>9
PKD1L1-002 ENSP00000393466 ENST00000433506	H7C083 [Direct mapping] Polycystic kidney disease protein 1-like 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] GO:0050982 [detection of mechanical stimulus] Show all	164 aa 18.3 kDa	No	1

Contact

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.