Tissue expression of ACTC1 - Staining in adipose tissue - The Human Protein Atlas

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ACTC1

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TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA ADIPOSE TISSUE

GENE/PROTEIN

Antibody validation

Dictionary
	Soft tissue


Tissue proteome
	Adipose

SOFT TISSUE - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	17.1	TPM
GTEx:	3.2	RPKM
FANTOM5:	0.4	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Not detected
Chondrocytes:	Not detected
Fibroblasts:	Not detected
Peripheral nerve:	Not detected

Antibody staining	Antibody HPA041264		Antibody HPA041271		Antibody CAB003761		Antibody CAB037330
Adipocytes	Medium		Low		Not detected		Not detected
Chondrocytes	Medium		Not detected		Not detected
Fibroblasts	Medium		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Not detected
Fibroblasts:	Not detected
Peripheral nerve:	Not detected

Antibody staining	Antibody HPA041264		Antibody HPA041271		Antibody CAB003761		Antibody CAB037330
Adipocytes	Medium		Not detected		Not detected		Not detected
Fibroblasts	Medium		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	17.1

N/A

Female, age 80

Sample 1
TPM: 2.3

Cell types%

Adipocytes: 95
Other cell types: 5

N/A

Female, age 45

Sample 2
TPM: 0.5

N/A

Female, age 57

Sample 3
TPM: 0.6

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 74

Sample 4
TPM: 81.5

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 59

Sample 5
TPM: 0.4

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	3.2

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 2.9

Samples: 350

Max RPKM: 66.1
Min RPKM: 0.0
Std RPKM: 7.5
Median RPKM: 0.6

GTEX-14C5O-0226-SM-5SI6O

60-69 years, male

66.1

GTEX-13OW6-0526-SM-5L3HY

50-59 years, male

53.3

GTEX-13NZ8-0926-SM-5MR3U

60-69 years, female

52.4

GTEX-1212Z-2426-SM-5EQ5D

60-69 years, male

44.6

GTEX-YECK-0226-SM-4W215

60-69 years, male

38.5

GTEX-UTHO-0426-SM-5SI7N

60-69 years, male

35.5

GTEX-X4XY-0326-SM-46MVZ

60-69 years, male

35.2

GTEX-S95S-1326-SM-2XCDK

60-69 years, male

29.7

GTEX-OXRK-0326-SM-3NB3R

50-59 years, female

27.3

GTEX-ZYFD-0226-SM-5NQ86

50-59 years, male

25.9

Show all

Adipose - Visceral (Omentum)
RPKM: 3.7

Samples: 227

Max RPKM: 119.9
Min RPKM: 0.0
Std RPKM: 10.4
Median RPKM: 0.8

GTEX-13OW7-1126-SM-5K7V6

50-59 years, male

119.9

GTEX-11DXZ-1426-SM-5H12A

50-59 years, male

59.3

GTEX-12C56-0826-SM-5EGJ5

20-29 years, male

39.8

GTEX-ZVP2-0226-SM-57WBD

50-59 years, male

36.0

GTEX-14ICL-0926-SM-5S2TU

30-39 years, male

31.6

GTEX-WOFM-0726-SM-3MJF8

20-29 years, male

31.4

GTEX-ZTX8-0726-SM-59HL9

20-29 years, male

27.3

GTEX-UPK5-1826-SM-3GAEB

40-49 years, male

23.2

GTEX-13OW6-2426-SM-5K7WO

50-59 years, male

18.3

GTEX-X585-2526-SM-4QAS1

50-59 years, male

18.0

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	0.4

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 0.4

65,65,76 years, mixed

0.4

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.