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PTMS

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:43.0TPM
GTEx:234.0RPKM
FANTOM5:374.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Medium
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA038186

  

Endothelial cells

 High  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 High  
 
 
 

COLON - HPA RNA-seq

Average TPM

43.0
overview Male, age 54 Sample 1
TPM: 64.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 65.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 29.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 61.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 24.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 64.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 23.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 53.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 28.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 38.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 48.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 35
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

234.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 327.8
Samples: 149

Max RPKM: 745.6
Min RPKM: 146.0
Std RPKM: 85.7
Median RPKM: 312.3
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 745.6
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 554.1
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 545.9
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 542.0
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 519.2
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 511.7
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 474.5
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 469.7
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 467.5
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 463.3
Show all
Colon - Transverse
RPKM: 162.7
Samples: 196

Max RPKM: 468.7
Min RPKM: 25.5
Std RPKM: 99.8
Median RPKM: 134.2
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 468.7
GTEX-11GSP-1626-SM-5986N 60-69 years, female 466.2
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 450.3
GTEX-117YX-0826-SM-5H11J 50-59 years, male 406.5
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 399.5
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 363.9
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 363.1
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 330.2
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 329.9
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 324.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

374.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 374.2
FF:10014-101C5 62,83,84 years, mixed 374.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.