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COLON - Expression summary

RNA expression
HPA:54.1TPM
GTEx:29.1RPKM
FANTOM5:46.8Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

54.1
overview Male, age 54 Sample 1
TPM: 56.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 50.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 50.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 49
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 44.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 60.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 67.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 48.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 53.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 55
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 65.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 50.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 49.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

29.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 26.0
Samples: 149

Max RPKM: 38.3
Min RPKM: 18.5
Std RPKM: 3.3
Median RPKM: 25.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 38.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 36.0
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 33.6
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 33.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 32.5
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 32.3
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 32.0
GTEX-XBED-1726-SM-47JYO 60-69 years, male 31.6
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 31.5
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 31.5
Show all
Colon - Transverse
RPKM: 31.5
Samples: 196

Max RPKM: 91.4
Min RPKM: 19.6
Std RPKM: 6.2
Median RPKM: 31.0
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 91.4
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 43.2
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 40.2
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 39.9
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 39.8
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 39.8
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 39.5
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 39.3
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 39.3
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 39.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

46.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 46.8
FF:10014-101C5 62,83,84 years, mixed 46.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.