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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:11.4TPM
GTEx:1.9RPKM
FANTOM5:423.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA029298

  

Antibody CAB002426

  

Antibody CAB002921

  

Endothelial cells

 Low   High   Low  

Glandular cells

 Not detected   Low   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

11.4
overview Male, age 54 Sample 1
TPM: 13.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.9
Samples: 149

Max RPKM: 8.0
Min RPKM: 0.0
Std RPKM: 0.9
Median RPKM: 0.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 8.0
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 5.4
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 2.7
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 2.7
GTEX-145LS-2926-SM-5O99G 60-69 years, female 2.6
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 2.5
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 2.4
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 2.4
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 2.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 2.3
Show all
Colon - Transverse
RPKM: 2.6
Samples: 196

Max RPKM: 9.0
Min RPKM: 0.0
Std RPKM: 1.6
Median RPKM: 2.4
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 9.0
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 6.8
GTEX-139YR-2126-SM-5KM11 50-59 years, male 6.7
GTEX-144GN-1126-SM-5LU33 50-59 years, male 6.3
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 5.9
GTEX-11P7K-1526-SM-5EGI7 30-39 years, male 5.8
GTEX-X15G-1326-SM-4PQZJ 50-59 years, female 5.8
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 5.8
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 5.7
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 5.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

423.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 423.5
FF:10014-101C5 62,83,84 years, mixed 423.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.