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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:175.3TPM
GTEx:103.6RPKM
FANTOM5:261.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA044999

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

175.3
overview Male, age 54 Sample 1
TPM: 188.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 179.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 221.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 192.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 167.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 180.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 215.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 120.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 188.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 175.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 172.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 151.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 126.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

103.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 104.7
Samples: 149

Max RPKM: 168.9
Min RPKM: 41.2
Std RPKM: 22.3
Median RPKM: 102.9
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 168.9
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 165.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 164.1
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 160.7
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 156.8
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 154.5
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 147.1
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 145.4
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 144.4
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 143.1
Show all
Colon - Transverse
RPKM: 102.8
Samples: 196

Max RPKM: 184.5
Min RPKM: 43.8
Std RPKM: 22.1
Median RPKM: 101.7
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 184.5
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 168.0
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 167.9
GTEX-Q734-1126-SM-48TZY 40-49 years, female 165.7
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 160.0
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 153.6
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 151.1
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 146.2
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 145.6
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 142.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

261.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 261.9
FF:10014-101C5 62,83,84 years, mixed 261.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.