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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:11.9TPM
GTEx:8.1RPKM
FANTOM5:80.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA030196

  

Antibody HPA030197

  

Antibody HPA030198

  

Antibody CAB033918

  

Endothelial cells

 Not detected   Not detected   Not detected   Low  

Glandular cells

 Medium   Not detected   Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
          
       
       
       

COLON - HPA RNA-seq

Average TPM

11.9
overview Male, age 54 Sample 1
TPM: 19.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 11.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 10.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 13.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 14.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.3
Samples: 149

Max RPKM: 15.7
Min RPKM: 2.8
Std RPKM: 1.8
Median RPKM: 4.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 15.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 13.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 11.2
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 8.9
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 8.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 8.8
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 8.6
GTEX-V955-1726-SM-4JBHF 60-69 years, male 8.5
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 8.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 8.3
Show all
Colon - Transverse
RPKM: 10.3
Samples: 196

Max RPKM: 21.9
Min RPKM: 2.7
Std RPKM: 4.1
Median RPKM: 10.9
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 21.9
GTEX-144GN-1126-SM-5LU33 50-59 years, male 17.9
GTEX-Q734-1126-SM-48TZY 40-49 years, female 17.9
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 17.3
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 17.1
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 17.0
GTEX-R55G-1226-SM-48FDC 40-49 years, female 16.9
GTEX-11DXX-1826-SM-5H126 60-69 years, female 16.6
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 16.6
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 16.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

80.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 80.2
FF:10014-101C5 62,83,84 years, mixed 80.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.