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SOFT TISSUE - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:38.2TPM
GTEx:12.0RPKM
FANTOM5:102.3Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Chondrocytes:Medium
Fibroblasts:Low
Peripheral nerve:Low
 
 
 
 

Antibody staining

Antibody HPA021192

  

Antibody HPA021195

  

Antibody HPA028759

  

Antibody CAB021094

  

Adipocytes

 Low   Not detected  

Chondrocytes

 Medium   Not detected   High  

Fibroblasts

 Low   Not detected   Not detected  

Peripheral nerve

 Low   Not detected  
          
          
          
       
       
       

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Fibroblasts:Low
Peripheral nerve:Low
 
 

Antibody staining

Antibody HPA021192

  

Antibody HPA021195

  

Antibody HPA028759

  

Antibody CAB021094

  

Adipocytes

 Low   Low   Not detected   Not detected  

Fibroblasts

 Not detected   Not detected   Not detected   Medium  

Peripheral nerve

 Low   Not detected   Medium  
          
       
       
       

ADIPOSE TISSUE - HPA RNA-seq

Average TPM

38.2
N/A Female, age 80 Sample 1
TPM: 31.6
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45 Sample 2
TPM: 54.2
N/A Female, age 57 Sample 3
TPM: 50.4
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74 Sample 4
TPM: 17.3
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59 Sample 5
TPM: 37.3
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM

12.0

GTEx sample id

Sample description

RPKM
Adipose - Subcutaneous
RPKM: 12.7
Samples: 350

Max RPKM: 62.1
Min RPKM: 4.1
Std RPKM: 6.4
Median RPKM: 11.4
GTEX-PWCY-1926-SM-3NB25 20-29 years, female 62.1
GTEX-13QBU-2526-SM-5LU4X 40-49 years, female 44.0
GTEX-S7SF-1826-SM-3K2AD 20-29 years, female 35.6
GTEX-WFG8-2326-SM-5S2UE 20-29 years, male 35.6
GTEX-ZDTT-2626-SM-5S2OP 60-69 years, male 33.0
GTEX-14BMU-2126-SM-5S2TS 20-29 years, female 31.6
GTEX-ZYY3-0226-SM-5E45M 60-69 years, female 31.2
GTEX-REY6-0326-SM-2TF5A 60-69 years, male 30.9
GTEX-147F3-0626-SM-5NQ9I 50-59 years, female 30.5
GTEX-YB5E-2126-SM-5IFI7 40-49 years, male 29.9
Show all
Adipose - Visceral (Omentum)
RPKM: 11.1
Samples: 227

Max RPKM: 33.4
Min RPKM: 3.8
Std RPKM: 4.8
Median RPKM: 10.0
GTEX-Y5LM-0826-SM-4VDSW 40-49 years, female 33.4
GTEX-1122O-0926-SM-5N9C9 60-69 years, female 29.3
GTEX-ZT9W-1026-SM-57WG5 50-59 years, male 24.3
GTEX-12WSL-1126-SM-5CVNK 50-59 years, male 23.1
GTEX-ZLV1-0926-SM-5S2MR 60-69 years, female 23.0
GTEX-111YS-1326-SM-5EGGK 60-69 years, male 22.5
GTEX-YEC3-0926-SM-5Q5AC 50-59 years, male 22.0
GTEX-WH7G-1126-SM-3NMBK 40-49 years, male 21.8
GTEX-ZDTT-0526-SM-5HL4M 60-69 years, male 21.8
GTEX-12C56-0826-SM-5EGJ5 20-29 years, male 21.0
Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million

102.3

FANTOM5 sample id

Sample description

Tags Per Million
Adipose tissue
Tags Per Million: 102.3
FF:10010-101C1 65,65,76 years, mixed 102.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.