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SGCB

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.5TPM
GTEx:19.1RPKM
FANTOM5:21.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA011422

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

16.5
overview Male, age 54 Sample 1
TPM: 16.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 11.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 17.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 24.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

19.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 25.4
Samples: 149

Max RPKM: 38.0
Min RPKM: 11.3
Std RPKM: 4.6
Median RPKM: 25.5
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 38.0
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 36.4
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 36.1
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 35.0
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 34.6
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 34.0
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 34.0
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 33.4
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 32.3
GTEX-145LS-2926-SM-5O99G 60-69 years, female 32.3
Show all
Colon - Transverse
RPKM: 14.4
Samples: 196

Max RPKM: 35.7
Min RPKM: 3.1
Std RPKM: 7.8
Median RPKM: 11.9
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 35.7
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 35.4
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 34.3
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 32.6
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 31.2
GTEX-S341-1426-SM-4AD6U 40-49 years, female 30.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 30.2
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 29.7
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 29.3
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 29.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.8
FF:10014-101C5 62,83,84 years, mixed 21.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.