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APEH

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:48.1TPM
GTEx:26.0RPKM
FANTOM5:39.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA029700

  

Antibody HPA029701

  

Antibody HPA029702

  

Antibody HPA029703

  

Endothelial cells

 Not detected   Not detected   Not detected   Low  

Glandular cells

 Medium   Medium   Medium   High  

Peripheral nerve/ganglion

 Not detected   Not detected   Low  
       
       
       

COLON - HPA RNA-seq

Average TPM

48.1
overview Male, age 54 Sample 1
TPM: 40.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 53.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 48.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 46.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 37.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 47
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 74
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 46.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 37.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 63.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 53.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 49.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

26.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 17.2
Samples: 149

Max RPKM: 30.3
Min RPKM: 8.2
Std RPKM: 4.3
Median RPKM: 16.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 30.3
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 29.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 26.8
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 25.4
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 25.2
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 25.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 24.8
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 24.7
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 24.6
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 24.5
Show all
Colon - Transverse
RPKM: 32.7
Samples: 196

Max RPKM: 65.5
Min RPKM: 6.6
Std RPKM: 12.9
Median RPKM: 32.2
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 65.5
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 61.1
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 60.3
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 59.9
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 59.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 59.0
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 58.2
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 57.6
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 57.5
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 56.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

39.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 39.8
FF:10014-101C5 62,83,84 years, mixed 39.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.