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HMGB2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:119.0TPM
GTEx:34.2RPKM
FANTOM5:126.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA003506

  

Antibody HPA053314

  

Antibody CAB037206

  

Endothelial cells

 High   Not detected   High  

Glandular cells

 High   Medium   High  

Peripheral nerve/ganglion

 Medium   High  
     
     

COLON - HPA RNA-seq

Average TPM

119.0
overview Male, age 54 Sample 1
TPM: 112.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 102.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 124.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 109
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 57.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 117.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 178.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 102.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 124.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 189.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 134.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 110.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 83.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

34.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 30.3
Samples: 149

Max RPKM: 62.1
Min RPKM: 12.8
Std RPKM: 10.1
Median RPKM: 28.0
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 62.1
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 62.0
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 61.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 57.0
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 55.2
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 55.2
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 54.0
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 53.0
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 51.9
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 49.3
Show all
Colon - Transverse
RPKM: 37.2
Samples: 196

Max RPKM: 84.9
Min RPKM: 14.5
Std RPKM: 13.6
Median RPKM: 34.0
GTEX-1128S-1626-SM-5H12O 60-69 years, female 84.9
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 81.1
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 74.7
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 73.9
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 69.7
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 68.0
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 65.0
GTEX-QCQG-1626-SM-48U26 50-59 years, female 64.8
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 63.6
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 62.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

126.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 126.0
FF:10014-101C5 62,83,84 years, mixed 126.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.