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PI16

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:9.8TPM
GTEx:7.2RPKM
FANTOM5:7.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA043763

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

9.8
overview Male, age 54 Sample 1
TPM: 6.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 34
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.8
Samples: 149

Max RPKM: 57.3
Min RPKM: 0.3
Std RPKM: 9.8
Median RPKM: 4.7
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 57.3
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 52.6
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 40.2
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 37.7
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 30.3
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 29.8
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 29.3
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 27.6
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 26.9
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 26.2
Show all
Colon - Transverse
RPKM: 6.0
Samples: 196

Max RPKM: 63.1
Min RPKM: 0.0
Std RPKM: 9.6
Median RPKM: 2.4
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 63.1
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 54.5
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 44.7
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 41.8
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 37.8
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 37.1
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 34.9
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 32.5
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 32.2
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 25.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

7.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 7.4
FF:10014-101C5 62,83,84 years, mixed 7.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.