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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:15.9TPM
GTEx:0.7RPKM
FANTOM5:2945.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA019462

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

15.9
overview Male, age 54 Sample 1
TPM: 141.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 35.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.3
Samples: 149

Max RPKM: 25.5
Min RPKM: 0.0
Std RPKM: 2.1
Median RPKM: 0.0
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 25.5
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 2.3
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 2.1
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 1.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 1.7
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 1.3
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 0.8
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 0.7
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 0.6
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 0.6
Show all
Colon - Transverse
RPKM: 1.0
Samples: 196

Max RPKM: 29.2
Min RPKM: 0.0
Std RPKM: 3.0
Median RPKM: 0.2
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 29.2
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 19.3
GTEX-144GN-1126-SM-5LU33 50-59 years, male 17.8
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 14.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 7.9
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 7.3
GTEX-R55D-1826-SM-48FEF 50-59 years, male 4.5
GTEX-XGQ4-1226-SM-4AT67 50-59 years, male 4.5
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 4.4
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 3.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

2945.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 2945.4
FF:10014-101C5 62,83,84 years, mixed 2945.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.