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CASC4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:47.0TPM
GTEx:11.6RPKM
FANTOM5:77.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA043015

  

Antibody HPA049488

  

Endothelial cells

 Not detected   Low  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

47.0
overview Male, age 54 Sample 1
TPM: 60.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 65.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 53
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 44.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 39
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 32.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 46
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 41.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 43.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 50.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 51.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 48.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 33.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.9
Samples: 149

Max RPKM: 18.6
Min RPKM: 6.8
Std RPKM: 2.3
Median RPKM: 11.4
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 18.6
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 18.0
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 17.4
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 17.4
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 17.2
GTEX-12696-1926-SM-5EGJT 60-69 years, male 16.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 16.5
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 16.3
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 16.0
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 15.9
Show all
Colon - Transverse
RPKM: 11.5
Samples: 196

Max RPKM: 21.7
Min RPKM: 6.1
Std RPKM: 2.5
Median RPKM: 11.2
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 21.7
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 20.4
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 20.2
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 20.0
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 20.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 17.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 17.2
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 17.0
GTEX-1128S-1626-SM-5H12O 60-69 years, female 16.8
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 16.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

77.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 77.6
FF:10014-101C5 62,83,84 years, mixed 77.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.