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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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TBC1D21
  • TISSUE

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PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

GENERAL INFORMATION

Gene name

TBC1D21

Gene description

TBC1 domain family, member 21

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Not detected
HPA (cell line):Not detected
HPA (normal tissue):Tissue enriched (testis)

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Estimation of protein expression could not be performed. View primary data.

ANTIBODY IHC RELIABILITY

Data reliability
description

RNA-based expert annotation gave inconclusive results. Pending external verification.

Reliability score

Uncertain based on 1 antibody.
HPA043319
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PROGNOSTIC SUMMARY

Gene product is not prognostic.
Show all

RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Not detected

PROTEIN EXPRESSION

Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Liver cancer

STAINING SUMMARY

HPA043319

Cancer

Cancer staining

Breast cancer
Carcinoid
Cervical cancer
Colorectal cancer
Endometrial cancer
Glioma
Head and neck cancer
Liver cancer
Lung cancer
Lymphoma
 

Cancer

Cancer staining

Melanoma
Ovarian cancer
Pancreatic cancer
Prostate cancer
Renal cancer
Skin cancer
Stomach cancer
Testis cancer
Thyroid cancer
Urothelial cancer

Staining summary

Moderate cytoplasmic immunoreactivity was observed in cases of papillary adenocarcinoma of thyroid, cervical, breast, ovarian and colorectal cancers. A few malignant gliomas and stomach cancers showed moderate to strong positivity. Malignant cells in general were weakly stained or negative.

GENE INFORMATION

Gene name

TBC1D21 (HGNC Symbol)

Synonyms

MGC34741, MgcRabGAP

Description

TBC1 domain family, member 21 (HGNC Symbol)

Entrez gene summary

Chromosome

15

Cytoband

q24.1

Chromosome location (bp)

73873608 - 73889214

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000167139 (version 83.38)

Entrez gene

161514

UniProt

Q8IYX1 (UniProt - Evidence at transcript level)

neXtProt

NX_Q8IYX1

Antibodypedia

TBC1D21 antibodies

PROTEIN BROWSER

TBC1D21-001
TBC1D21-002
TBC1D21-003

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

TBC1D21-001
ENSP00000300504
ENST00000300504
Q8IYX1 [Direct mapping]
TBC1 domain family member 21
Show all
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Show all
GO:0001669 [acrosomal vesicle]
GO:0003779 [actin binding]
GO:0005096 [GTPase activator activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0070062 [extracellular exosome]
Show all
336 aa
39.2 kDa
No 0
TBC1D21-002
ENSP00000439325
ENST00000535547
Q8IYX1 [Direct mapping]
TBC1 domain family member 21
Show all
Predicted intracellular proteins
Show all
GO:0005096 [GTPase activator activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0070062 [extracellular exosome]
Show all
300 aa
35 kDa
No 0
TBC1D21-003
ENSP00000457096
ENST00000562056
H3BTA9 [Direct mapping]
TBC1 domain family member 21
Show all
Predicted intracellular proteins
Show all
299 aa
35 kDa
No 0

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