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Gene name

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Chromosome

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In atlas

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Reliability

Reliability

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Method

Validation

Method

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Searches

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Expression

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Cell line

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Cancer

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Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

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TPM4
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

TPM4

Gene description

Tropomyosin 4

Protein class

Cancer-related genes
Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

10
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General cytoplasmic expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. Caution, targets protein from more than one gene.

Reliability score

Approved based on 3 antibodies.
HPA047089 , HPA053624 , CAB004685
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Smooth muscle

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

TPM4

Synonyms

Description

Tropomyosin 4 (HGNC Symbol)

Entrez gene summary

This gene encodes a member of the tropomyosin family of actin-binding proteins involved in the contractile system of striated and smooth muscles and the cytoskeleton of non-muscle cells. Tropomyosins are dimers of coiled-coil proteins that polymerize end-to-end along the major groove in most actin filaments. They provide stability to the filaments and regulate access of other actin-binding proteins. In muscle cells, they regulate muscle contraction by controlling the binding of myosin heads to the actin filament. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2009]

Chromosome

19

Cytoband

Chromosome location (bp)

16067021 - 16103005

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000167460 (version 83.38)

Entrez gene

7171

UniProt

P67936 (UniProt - Evidence at protein level)

neXtProt

NX_P67936

Antibodypedia

TPM4 antibodies

PROTEIN BROWSER

TPM4-001
TPM4-002
TPM4-007
TPM4-008
TPM4-009
TPM4-010
TPM4-012
TPM4-014
TPM4-015
TPM4-019

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

TPM4-001
ENSP00000345230
ENST00000344824
P67936 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001649 [osteoblast differentiation]
GO:0001725 [stress fiber]
GO:0002102 [podosome]
GO:0003779 [actin binding]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005862 [muscle thin filament tropomyosin]
GO:0005925 [focal adhesion]
GO:0006928 [movement of cell or subcellular component]
GO:0006936 [muscle contraction]
GO:0008307 [structural constituent of muscle]
GO:0016020 [membrane]
GO:0030049 [muscle filament sliding]
GO:0030863 [cortical cytoskeleton]
GO:0031941 [filamentous actin]
GO:0070062 [extracellular exosome]
Show all
284 aa
32.7 kDa
No 0
TPM4-002
ENSP00000300933
ENST00000300933
P67936 [Direct mapping]
Tropomyosin alpha-4 chain
V9HW56 [Target identity:100%; Query identity:100%]
Epididymis secretory protein Li 108; Tropomyosin 4, isoform CRA_a
Show all
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001649 [osteoblast differentiation]
GO:0001725 [stress fiber]
GO:0003779 [actin binding]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005862 [muscle thin filament tropomyosin]
GO:0005925 [focal adhesion]
GO:0006928 [movement of cell or subcellular component]
GO:0006936 [muscle contraction]
GO:0008307 [structural constituent of muscle]
GO:0016020 [membrane]
GO:0030049 [muscle filament sliding]
GO:0070062 [extracellular exosome]
Show all
248 aa
28.5 kDa
No 0
TPM4-007
ENSP00000466158
ENST00000589897
K7ELP0 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
69 aa
8 kDa
No 0
TPM4-008
ENSP00000468246
ENST00000586499
K7ERG3 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
170 aa
19.3 kDa
No 0
TPM4-009
ENSP00000467087
ENST00000586833
K7ENT6 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
179 aa
20.6 kDa
No 0
TPM4-010
ENSP00000467558
ENST00000588507
K7EPV9 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
96 aa
11.3 kDa
No 0
TPM4-012
ENSP00000467250
ENST00000588410
K7EP68 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
   Phobius predicted secreted proteins
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
138 aa
15.8 kDa
No 0
TPM4-014
ENSP00000466106
ENST00000588483
K7ELJ3 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
16 aa
2 kDa
No 0
TPM4-015
ENSP00000466654
ENST00000592138
K7EMU5 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
102 aa
12 kDa
No 0
TPM4-019
ENSP00000468010
ENST00000592822
K7EQW8 [Direct mapping]
Tropomyosin alpha-4 chain
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
59 aa
6.8 kDa
No 0

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