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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:301.6TPM
GTEx:70.7RPKM
FANTOM5:197.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA011101

  

Antibody CAB018969

  

Endothelial cells

 Low   Medium  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

301.6
overview Male, age 54 Sample 1
TPM: 435.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 367
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 354.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 430.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 222.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 173.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 303.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 294.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 178.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 331.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 350.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 245
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 233.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

70.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.7
Samples: 149

Max RPKM: 38.5
Min RPKM: 1.7
Std RPKM: 5.7
Median RPKM: 5.1
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 38.5
GTEX-XBED-1726-SM-47JYO 60-69 years, male 35.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 35.2
GTEX-V955-1726-SM-4JBHF 60-69 years, male 28.4
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 23.0
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 22.4
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 17.9
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 16.3
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 15.4
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 13.5
Show all
Colon - Transverse
RPKM: 119.4
Samples: 196

Max RPKM: 356.0
Min RPKM: 2.3
Std RPKM: 90.3
Median RPKM: 133.4
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 356.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 348.3
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 313.3
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 303.5
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 292.0
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 282.9
GTEX-11DXX-1826-SM-5H126 60-69 years, female 279.0
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 264.5
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 254.3
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 251.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

197.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 197.2
FF:10014-101C5 62,83,84 years, mixed 197.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.