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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:42.6TPM
GTEx:26.7RPKM
FANTOM5:85.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 
 

Antibody staining

Antibody HPA039176

  

Antibody CAB072836

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

42.6
overview Male, age 54 Sample 1
TPM: 42.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 39.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 39
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 48.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 33.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 46.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 39.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 39.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 45.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 47.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 50.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 46.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 34.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

26.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 24.7
Samples: 149

Max RPKM: 34.4
Min RPKM: 19.2
Std RPKM: 2.6
Median RPKM: 24.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 34.4
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 33.2
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 31.3
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 30.4
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 30.4
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 29.1
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 28.6
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 28.5
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 28.2
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 27.9
Show all
Colon - Transverse
RPKM: 28.2
Samples: 196

Max RPKM: 46.3
Min RPKM: 11.4
Std RPKM: 4.9
Median RPKM: 27.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 46.3
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 44.2
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 40.6
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 40.2
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 39.2
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 38.4
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 38.4
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 37.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 36.8
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 36.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

85.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 85.6
FF:10014-101C5 62,83,84 years, mixed 85.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.