Fields »
ABOUT
HELP
BLOG
EVPL

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:3.6TPM
GTEx:6.3RPKM
FANTOM5:14.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA053969

  

Antibody CAB002220

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Not detected   Low  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

3.6
overview Male, age 54 Sample 1
TPM: 6.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 5.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.9
Samples: 149

Max RPKM: 18.5
Min RPKM: 0.7
Std RPKM: 4.1
Median RPKM: 4.8
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 18.5
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 17.8
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 17.8
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 16.5
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 15.9
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 15.7
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 15.3
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 14.6
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 14.3
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 14.3
Show all
Colon - Transverse
RPKM: 6.6
Samples: 196

Max RPKM: 30.2
Min RPKM: 0.1
Std RPKM: 3.3
Median RPKM: 6.6
GTEX-11GSP-1626-SM-5986N 60-69 years, female 30.2
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 24.1
GTEX-13QBU-1826-SM-5IJG3 40-49 years, female 12.4
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 11.8
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 11.5
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 11.3
GTEX-S4P3-1226-SM-4AD4Y 50-59 years, female 11.0
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 11.0
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 10.8
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 10.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.2
FF:10014-101C5 62,83,84 years, mixed 14.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.