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GSDMA

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:0.8TPM
GTEx:0.1RPKM
FANTOM5:0.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA023313

  

Antibody HPA064826

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

0.8
overview Male, age 54 Sample 1
TPM: 0.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 0.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.1
Samples: 149

Max RPKM: 1.2
Min RPKM: 0.0
Std RPKM: 0.2
Median RPKM: 0.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1.2
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 1.1
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 1.0
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 0.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 0.7
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 0.7
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 0.6
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 0.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 0.4
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 0.4
Show all
Colon - Transverse
RPKM: 0.2
Samples: 196

Max RPKM: 1.8
Min RPKM: 0.0
Std RPKM: 0.2
Median RPKM: 0.1
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 1.8
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 0.9
GTEX-SE5C-1526-SM-4BRWU 40-49 years, female 0.8
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 0.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 0.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 0.6
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 0.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 0.5
GTEX-13PL7-2526-SM-5IFGR 60-69 years, female 0.5
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 0.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

0.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 0.3
FF:10014-101C5 62,83,84 years, mixed 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.