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PXDC1

COLON - Expression summary

RNA expression
HPA:9.9TPM
GTEx:19.6RPKM
FANTOM5:16.4Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

9.9
overview Male, age 54 Sample 1
TPM: 8.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 20.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

19.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 26.1
Samples: 149

Max RPKM: 107.7
Min RPKM: 14.0
Std RPKM: 10.3
Median RPKM: 23.6
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 107.7
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 62.7
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 54.5
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 51.5
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 47.9
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 46.6
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 46.2
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 40.7
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 40.6
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 39.7
Show all
Colon - Transverse
RPKM: 14.8
Samples: 196

Max RPKM: 62.3
Min RPKM: 2.0
Std RPKM: 11.1
Median RPKM: 10.2
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 62.3
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 53.3
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 48.7
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 47.0
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 45.9
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 45.2
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 43.4
GTEX-ZY6K-1226-SM-5GZYL 50-59 years, male 42.0
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 37.2
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 34.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

16.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 16.4
FF:10014-101C5 62,83,84 years, mixed 16.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.