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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:0.9TPM
GTEx:1.0RPKM
FANTOM5:5.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody CAB000001

  

Antibody CAB065764

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   

COLON - HPA RNA-seq

Average TPM

0.9
overview Male, age 54 Sample 1
TPM: 0.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 2.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.4
Samples: 149

Max RPKM: 3.4
Min RPKM: 0.2
Std RPKM: 0.6
Median RPKM: 1.3
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 3.4
GTEX-13111-1926-SM-5GCOL 50-59 years, male 3.3
GTEX-ZYFG-1826-SM-5GZWX 60-69 years, female 3.1
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 2.8
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 2.8
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 2.8
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 2.7
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 2.7
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 2.6
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 2.6
Show all
Colon - Transverse
RPKM: 0.7
Samples: 196

Max RPKM: 5.5
Min RPKM: 0.0
Std RPKM: 0.7
Median RPKM: 0.5
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 5.5
GTEX-S341-1426-SM-4AD6U 40-49 years, female 3.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 2.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 2.5
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 2.3
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 2.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 2.1
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 2.1
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 2.0
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 1.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

5.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 5.7
FF:10014-101C5 62,83,84 years, mixed 5.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.