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SH3TC2

COLON - Expression summary

RNA expression
HPA:0.1TPM
GTEx:0.2RPKM
FANTOM5:1.0Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA037683

  

Antibody HPA037684

  

Endothelial cells

 Low   Medium  

Glandular cells

 Not detected   Low  

Peripheral nerve/ganglion

 Not detected   Medium  
   
   

COLON - HPA RNA-seq

Average TPM

0.1
overview Male, age 54 Sample 1
TPM: 0.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 0
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.2
Samples: 149

Max RPKM: 1.3
Min RPKM: 0.0
Std RPKM: 0.1
Median RPKM: 0.2
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 1.3
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 0.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 0.8
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 0.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 0.6
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 0.5
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 0.5
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 0.5
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 0.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 0.5
Show all
Colon - Transverse
RPKM: 0.1
Samples: 196

Max RPKM: 0.5
Min RPKM: 0.0
Std RPKM: 0.1
Median RPKM: 0.1
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 0.5
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 0.5
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 0.5
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 0.4
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 0.4
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 0.4
GTEX-S341-1426-SM-4AD6U 40-49 years, female 0.4
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 0.4
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 0.3
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 0.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1.0
FF:10014-101C5 62,83,84 years, mixed 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.