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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.7TPM
GTEx:21.0RPKM
FANTOM5:44.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA041995

  

Antibody HPA042988

  

Endothelial cells

 Low   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

13.7
overview Male, age 54 Sample 1
TPM: 18.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 12.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 13.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 22.4
Samples: 149

Max RPKM: 55.7
Min RPKM: 10.6
Std RPKM: 5.8
Median RPKM: 21.8
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 55.7
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 37.3
GTEX-145LS-2926-SM-5O99G 60-69 years, female 35.9
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 35.9
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 32.8
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 32.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 32.2
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 31.9
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 31.7
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 31.6
Show all
Colon - Transverse
RPKM: 20.0
Samples: 196

Max RPKM: 34.0
Min RPKM: 3.8
Std RPKM: 3.6
Median RPKM: 19.8
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 34.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 28.8
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 28.8
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 28.6
GTEX-11GSP-1626-SM-5986N 60-69 years, female 27.9
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 27.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 27.0
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 26.8
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 26.8
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 26.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

44.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 44.0
FF:10014-101C5 62,83,84 years, mixed 44.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.