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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:14.0TPM
GTEx:11.2RPKM
FANTOM5:9.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA023319

  

Antibody HPA023320

  

Antibody HPA023321

  

Antibody HPA023325

  

Endothelial cells

 High   High   Medium   High  

Glandular cells

 High   High   Medium   High  

Peripheral nerve/ganglion

 High   High   Medium   High  
       
       
       

COLON - HPA RNA-seq

Average TPM

14.0
overview Male, age 54 Sample 1
TPM: 11.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 17.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 16.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 14.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 19.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.4
Samples: 149

Max RPKM: 21.4
Min RPKM: 5.6
Std RPKM: 2.8
Median RPKM: 11.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 21.4
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 20.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 20.1
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 18.6
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 18.4
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 18.4
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 18.3
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 17.5
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 17.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 16.8
Show all
Colon - Transverse
RPKM: 11.0
Samples: 196

Max RPKM: 23.6
Min RPKM: 5.1
Std RPKM: 2.3
Median RPKM: 10.8
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 23.6
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 18.2
GTEX-11GSP-1626-SM-5986N 60-69 years, female 18.0
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 16.6
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 16.4
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 15.2
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 15.2
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 15.0
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 15.0
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 14.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

9.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 9.2
FF:10014-101C5 62,83,84 years, mixed 9.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.