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ELP5

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:32.9TPM
GTEx:16.7RPKM
FANTOM5:22.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA023279

  

Endothelial cells

 Low  

Glandular cells

 High  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

32.9
overview Male, age 54 Sample 1
TPM: 37.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 33.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 50.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 50.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 21.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 31.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 31.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 25.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 48
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 21.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 17.0
Samples: 149

Max RPKM: 39.4
Min RPKM: 6.1
Std RPKM: 5.3
Median RPKM: 16.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 39.4
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 31.4
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 31.3
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 29.9
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 27.7
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 26.6
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 26.4
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 26.3
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 25.9
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 25.7
Show all
Colon - Transverse
RPKM: 16.5
Samples: 196

Max RPKM: 40.4
Min RPKM: 3.2
Std RPKM: 4.6
Median RPKM: 16.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 40.4
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 35.6
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 27.2
GTEX-QCQG-1626-SM-48U26 50-59 years, female 25.9
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 25.6
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 25.1
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 25.0
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 25.0
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 24.8
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 24.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

22.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 22.2
FF:10014-101C5 62,83,84 years, mixed 22.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.