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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:297.7TPM
GTEx:178.7RPKM
FANTOM5:409.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA018531

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

297.7
overview Male, age 54 Sample 1
TPM: 248.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 85.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 166.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 319.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 445.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 561.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 262.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 196.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 338.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 100.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 283.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 686.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 175.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

178.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 197.4
Samples: 149

Max RPKM: 1443.5
Min RPKM: 6.3
Std RPKM: 293.0
Median RPKM: 57.3
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 1443.5
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 1354.5
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 1321.3
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 1086.1
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 1085.2
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 948.2
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 911.8
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 908.2
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 882.1
GTEX-YF7O-1626-SM-5IFII 50-59 years, male 794.4
Show all
Colon - Transverse
RPKM: 164.5
Samples: 196

Max RPKM: 1350.9
Min RPKM: 8.9
Std RPKM: 211.4
Median RPKM: 82.5
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 1350.9
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 1317.2
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 1169.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 944.6
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 835.0
GTEX-XQ8I-2126-SM-4BOOM 50-59 years, male 807.6
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 678.7
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 559.3
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 552.1
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 526.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

409.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 409.0
FF:10014-101C5 62,83,84 years, mixed 409.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.