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TADA3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:33.9TPM
GTEx:27.3RPKM
FANTOM5:50.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA042250

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

33.9
overview Male, age 54 Sample 1
TPM: 43.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 31.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 26.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 31.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 23.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 39.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 29.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 28.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 34
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 44.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 40.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 38.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

27.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 29.3
Samples: 149

Max RPKM: 42.6
Min RPKM: 17.9
Std RPKM: 5.0
Median RPKM: 29.2
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 42.6
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 41.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 40.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 39.2
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 38.8
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 37.8
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 37.7
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 37.5
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 37.2
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 37.1
Show all
Colon - Transverse
RPKM: 25.9
Samples: 196

Max RPKM: 35.8
Min RPKM: 6.8
Std RPKM: 3.8
Median RPKM: 25.8
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 35.8
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 35.2
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 34.5
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 33.3
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 33.3
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 33.0
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 33.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 32.4
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 32.3
GTEX-XYKS-2226-SM-4E3IU 60-69 years, female 32.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

50.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 50.2
FF:10014-101C5 62,83,84 years, mixed 50.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.