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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:97.6TPM
GTEx:51.9RPKM
FANTOM5:128.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA036986

  

Antibody HPA036987

  

Endothelial cells

 Low   Low  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Not detected   High  
   
   

COLON - HPA RNA-seq

Average TPM

97.6
overview Male, age 54 Sample 1
TPM: 77.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 93.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 103.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 54.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 48.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 94
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 134.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 122.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 96.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 135.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 127.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 96.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 83.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

51.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 38.6
Samples: 149

Max RPKM: 67.9
Min RPKM: 17.2
Std RPKM: 6.8
Median RPKM: 38.5
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 67.9
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 53.5
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 51.8
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 51.7
GTEX-V955-1726-SM-4JBHF 60-69 years, male 51.5
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 51.0
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 48.1
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 48.0
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 47.9
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 47.9
Show all
Colon - Transverse
RPKM: 62.0
Samples: 196

Max RPKM: 99.6
Min RPKM: 17.6
Std RPKM: 19.3
Median RPKM: 63.3
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 99.6
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 99.5
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 96.6
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 96.6
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 96.5
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 94.8
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 94.1
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 91.7
GTEX-Y9LG-1526-SM-4WWDR 30-39 years, male 91.1
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 90.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

128.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 128.9
FF:10014-101C5 62,83,84 years, mixed 128.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.