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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:34.7TPM
GTEx:9.7RPKM
FANTOM5:53.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
 

Antibody staining

Antibody CAB004580

  

Endothelial cells

 Medium  

Glandular cells

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

34.7
overview Male, age 54 Sample 1
TPM: 31.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 30.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 24.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 24.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 30.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 43.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 39.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 35.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 43.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 48.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 44.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 24.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.6
Samples: 149

Max RPKM: 15.7
Min RPKM: 5.2
Std RPKM: 1.6
Median RPKM: 9.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 15.7
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 15.2
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 14.8
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 13.2
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 12.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 12.7
GTEX-145LS-2926-SM-5O99G 60-69 years, female 12.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 12.3
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 12.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 12.1
Show all
Colon - Transverse
RPKM: 9.8
Samples: 196

Max RPKM: 14.2
Min RPKM: 5.1
Std RPKM: 1.8
Median RPKM: 9.7
GTEX-139YR-2126-SM-5KM11 50-59 years, male 14.2
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 14.2
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 14.1
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 13.9
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 13.9
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 13.6
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 13.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 13.5
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 13.4
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 13.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

53.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 53.8
FF:10014-101C5 62,83,84 years, mixed 53.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.